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ZIH-Publikationen 2006

ZIH-IR-0623 H. Hatzikirou, L. Brusch, A. Deutsch, K. Schaller, M. Simon
Characterization of Travelling Front Behaviour in a Lattice Gas Cellular Automaton Model of Glioma Invasion
In Journal: Mathematical Models and Methods in Applied Sciences, Vol: 15, Pages: 1779-1794 , 2006
ZIH-IR-0622 S. Hayat, K. Ostermann, L. Brusch, W. Pompe and G. Rödel
Towards in vivo computing: Quantitative analysis of an artificial gene regulatory network behaving as a RS flip-flop and simulating the system in silico
In Bio-Inspired Models of Network, Information and Computing Systems, ISBN: 1-4244-0539-4, pages 1-7, IEEE, 2006
ZIH-IR-0621 R. Henschel, M. S. Müller, Y. Kalaidzidis,
High Throughput Image Analysis on PetaFLOPS Systems
In Proceedings of Euro-Par 2006 Workshops, Aug. 29 - Sept. 1, Dresden,  LNCS 4375, pages 323-329, Springer Verlag, 2007
ZIH-IR-0620 C. A. Stewart, M. S. Müller, M. Lingwall
Progress Towards Petascale Applications in Biology: Status in 2006
In Euro-Par 2006: Parallel Processing, pages 289-303, Springer Verlag, 2007
ZIH-IR-0619 R. Müller-Pfefferkorn , R. Neumann, A. Hammad,  T. Harenberg, M. S. Hüsken, P. Mättig, M. Mechtel, D. Meder-Marouelli , St. Borovac, P. Ueberholz
Monitoring of Jobs and their Execution for the LHC Computing Grid
In Proceedings of the Cracow Grid Workshop (CGW 06)", Cracow, Poland, October  15-18, pages 224-231, 2006
ZIH-IR-0618 S. Saini, R. Ciotti, B. T. N. Gunney, T. E. Spelce, A. Koniges, D. Dossa, P. Adamidis, R. Rabenseifner, S. R. Tiyyagura, M. S. Müller, and R. Fatoohi
Performance Evaluation of Supercomputers using HPCC and IMB Benchmarks
In Proceedings of the IPDPS 2006 Conference, the 20th IEEE International Parallel & Distributed Processing Symposium, Workshop on Performance Modeling, Evaluation, and Optimization of Parallel and Distributed Systems (PMEO-PDS), ISBN: 1-4244-0054-6, 8 pp., 2006
ZIH-IR-0617 S. Saini, R. Rabenseifner, B. T. N. Gunney, T. E. Spelce, A. Koniges, D. Dossa, P. Adamidis, R. Ciotti, S. R. Tiyyagura, M. S. Müller, and R. Fatoohi
Performance Comparison of Cray X1 and Cray Opteron Cluster with Other Leading Platforms using HPCC and IMB Benchmarks
In Proceedings of the Cray Users Group Conference 2006 (CUG 2006),  May 8-11, Lugano, Switzerland, 18 pp., 2006
ZIH-IR-0616 T. Pompe, J. Starruß, M. Bobeth
Modeling of pattern development during fribronetic nanofibril formation
In Biointerphases, Volume 1, Issue 3, pages 93-97, American Vacuum Society / American Institute of Physics, 2006
ZIH-IR-0615 M. Kluge
Performance Evaluation of the CXFS File system on  the HPC/Storage Complex for data-intensive computing at the TU Dresden
In Computational Methods in Science and Technology, Special Issue, pages 29-32, Polish Academy of Science, Poznan 2006
ZIH-IR-0614 G. Juckeland, M. S. Müller, W. E. Nagel, and St. Pflüger
Accessing Data on SGI Altix: An Experience with Reality
In Proceedings of WMPI-2006, 8 pages, Austin, TX, USA, Conference Article only, 11-15 Feb. 2006
ZIH-IR-0613 H. Schwetlick, K. Schreiber
A primal-dual Jacobi-Davidson-like method for nonlinear eigenvalue problems
In  ETNA, the Electronic Transactions on Numerical Analysis, a special volume on Applied Linear Algebra, pages 1-20, 2006
ZIH-IR-0612 F. Peruani, A. Deutsch, M. Bär
Non-equilibrium clustering of self-propelled rods
In Physical Review E, Vol. 74, No. 3, DOI: 0.1103/PhysRevE.74.030904, pages 030904-1-030904-4, American Physical Society, 2006
ZIH-IR-0611 H. Mix, W. E. Nagel
Performance aspects on high performance computers - from microprocessors to highly parallel smp systems
In Computational Science and High Performance Computing: Notes on Numerical Fluid Mechanics and Multidisciplinary Design, Springer Verlag, ISBN 978-3-540-24120-1, Vol. 88, pages 389-398, 2006
ZIH-IR-0610 L. Brusch, P. Del Conte-Zerial, Y. Kalaidzidis, J. Rink, B. Habermann, M. Zerial, A. Deutsch
Protein Domains of GTPases on Membranes: Do They Rely on Turings Mechanism?
In G. de Vries, L. Brusch, A. Deutsch, H. Byrne, H. Herzel (Eds.): Mathematical Methods and Models in Bioscience, Birkhäuser, Boston, pages 35-48, 2006
ZIH-IR-0609 A. Bianchi, I. Pakarinen, J. Bajars, P. P. Caro, P. Grydgaard, J. Parrott and L. Brusch
Ethanol production with mikro-organisms: Process control and modelling
In M. Heiliö, T. Kauranne (Eds): Proceedings of the 18th ECMT modelling week, pages 9-23, Lappeenrannan teknillinen yliopisto, Lappeenranta, 2006
ZIH-IR-0608 V. Kumar
Evaluation Testing & Performance Measurements of Storage Resource Broker
A project report in partial fulfillment for the award of the degree "Bachelor of Technology in Computer Science and Engineering", pages 1-50, 2006
ZIH-IR-0607 K. Abhinav
Evaluation of Grid Middleware
A project report in partial fulfillment for the award of the degree "Bachelor of Technology in Computer Science and Engineering", pages 1-52, 2006
ZIH-IR-0606 S. Kottha, M. Schroeder
Classifying permanent and transient protein interactions
In Proceedings of the German Conference on Bioinformatics, Tübingen, Sept. 20-22, GI-Edition - Lecture Notes in Informatics (LNI), P-83, pages 54-63, Gesellschaft für Informatik, 2006
ZIH-IR-0605 U. Börner, A. Deutsch, M. Bär
A generalized discrete model linking rippling pattern formation and individual cell reversal statistics in colonies of myxobacteria
In Phys. Biol. 3, pages 138-146, IOP electronic journals, 2006
ZIH-IR-0604 A. Knüpfer, R. Brendel, H. Brunst, H. Mix, W. E. Nagel
Introducing the Open Trace Format (OTF)
In Vassil N. Alexandrov, Geert Dick van Albada, Peter M. A. Sloot, Jack Dongarra (Eds): Computational Science - ICCS 2006: 6th International Conference, Reading, UK, May 28-31, 2006, Proceedings, Part II,  Springer Verlag, ISBN: 3-540-34381-4, pages 526-533, Vol. 3992, 2006
ZIH-IR-0603 R. Janda, W. E. Nagel, B. Trenkler
Analyzing the Interaction of OpenMP Programs within Multiprogramming Environments on a Sun Fire E25K System with PARbench
In Proceedings of Euro-Par 2006, Dresden, Aug. 29 - Sept. 1, Springer Verlag, ISBN 978-3-540-37783-2,  Vol. 4128, pages 89-98, 2006
ZIH-IR-0602 D. Hackenberg, R. Schöne, W. E. Nagel, St. Pflüger
Optimizing OpenMP Parallelized DGEMM Calls on SGI Altix 3700

In Proceedings of Euro-Par 2006 Parallel Processing, Lecture Notes in Computer Science, Volume 4128/2006, ISBN 978-3-540-37783-2, pp 145-154, Springer Berlin / Heidelberg, 2006
ZIH-IR-0601 G. Juckeland, M. Kluge, R. Müller-Pfefferkorn, W. E. Nagel, B. Trenkler
The IBM eServer pSeries 690 as a Research Instrument for Computer Scientists
In G. Münster, D. Wolf, M. Kremer (Editors), NIC  Symposium 2006, pages 315-322, 1 - 2 March 2006, Jülich, Germany

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