ZIH-Publikationen 2013
ZIH-IR1351 | R. Schöne, A. Knüpfer, D. Molka Potentials and Limitations for Energy Efficiency Auto-Tuning In Vol. 25, Parallel Computing: Accelerating Computational Sciene and Engineering (CSE), pages 678--687, ISBN: 978-1-61499-381-3, DOI: 10.3233/978-1-61499-381-0-678, IOS Press, 2013 |
ZIH-IR1350 | A. Voss-Böhme, A. Deutsch Interacting Cell Systems In Encyclopedia of Systems Biology, Springer, 2013 |
ZIH-IR1349 | A. Voss-Böhme, W. de Back, J. Starruss Cellular Potts Model In Encyclopedia of Systems Biology, Springer, 2013 |
ZIH-IR-1348 | A. Knüpfer, R. Dietrich, J. Doleschal, M. Geimer, M. Hermanns, C. Rössel, R. Tschüter, B. Wesarg, F. Wolf Generic Support for Remote Memory Access Operations in Score-P and OTF2 In Seiten: 57--74, ISBN: 978-3-642-37348-0, DOI: 10.1007/978-3-642-37349-7_5, Springer Berlin Heidelberg, 2013 |
ZIH-IR-1347 | M. Weber, K. Mohror, M. Schulz, B. de Supinski, H. Brunst, Wolfgang E. Nagel Alignment-Based Metrics for Trace Comparison In Band: 8097, Lecture Notes in Computer Science, Seiten: 29--40, ISBN: 978-3-642-40046-9, Springer Berlin Heidelberg, 2013 |
ZIH-IR-1346 | M. Hibrich, R. Jäkel Distributed Accounting in Scope of Privacy Preserving In Grid and Pervasive Computing, Band 7861, Seiten: 11-22, ISBN: 978-3-642-38026-6, Springer Verlag, Berlin Heidelberg, 2013 |
ZIH-IR-1345 | M. Wagner, Wolfgang E. Nagel Strategies for Real-Time Event Reduction In Lecture Notes in Computer Science, Band 7640, Seiten: 429 - 438, Springer Verlag, Berlin Heidelberg, 2013 |
ZIH-IR-1343 | R. Grunzke, S. Breuers, S. Gesing, S. Herres-Pawlis, M. Kruse, D. Blunk, L. de la Garza, L. Packschies, P. Schäfer, C. Schärfe, T. Schlemmer, T. Steinke, B. Schuller, R. Müller-Pfefferkorn, R. Jäkel, Wolfgang E. Nagel, M. Atkinson, J. Krüger Standards-based Metadata Management for Molecular Simulations In Concurrency and Computation: Practice and Experience, DOI: 10.1002/cpe.3116, 2013 |
ZIH-IR-1342 | M. Wagner, A. Knüpfer, Wolfgang E. Nagel Hierarchical Memory Buffering Techniques for an In-Memory Event Tracing Extension to the Open Trace Format 2 In Seiten: 970-976, ISSN: 0190-3918, DOI: 10.1109/ICPP.2013.115, 2013 |
ZIH-IR-1341 | T. Hilbrich, J. Protze, B. de Supinski, M. Schulz, M. S. Müller, Wolfgang E. Nagel Intralayer Communication for Tree-Based Overlay Networks In Fourth International Workshop on Parallel Software Tools and Tool Infrastructures, Seiten: 995--1003, DOI: 10.1109/icpp.2013.118, IEEE Computer Society Press, 2013 |
ZIH-IR1340 | M. Balasubramanian, I. Banicescu, F. Ciorba Analyzing the robustness of scheduling algorithms using divisible load theory on heterogeneous systems In Proceedings of the 12th International Symposium on Parallel and Distributed Computing (ISPDC 2013), ISBN: ISBN-13 9780769550183, IEEE, 2013 |
ZIH-IR-1339 | K. Roensch, A. Tazaki, O. Chara, E. Tanaka Progressive Specification Rather than Intercalation of Segments During Limb Regeneration In Science, Band: 342, 6164, Seiten: 1375--1379, ISSN: 0036-8075, DOI: 10.1126/science.1241796, 2013 |
ZIH-IR-1338 | O. Aliyu, M. Seifert, J. Corral, J. Fuchs, T. Sharbel Copy Number Variation in Transcriptionally Active Regions of Sexual and Apomictic Boechera Demonstrates Independently Derived Apomictic Lineages In The Plant Cell Online, Band: 25, 10, Seiten: 3808--3823, ISSN: 1040-4651, 1532-{298X}, DOI: 10.1105/tpc.113.113860, 2013 |
ZIH-IR-1337 | N. Sukhija, I. Banicescu, S. Srivastava, F. Ciorba Evaluating the flexibility of dynamic loop scheduling on heterogeneous systems in the presence of fluctuating load using SimGrid In Seiten: 1429–1438, ISBN: 9780769549798, IEEE, 2013 |
ZIH-IR-1336 | M. Buchroithner, G. Ehlers, B. Hetze, H. Kohlschmidt, N. Prechtel Satellite-Based Technologies in Use for Extreme Nocturnal Mountain Rescue Operations: a Synergetic Approach Applying Geophysical Principles In Pure and Applied Geophysics, Springer, Basel, 2013 |
ZIH-IR-1335 | T. Hilbrich, J. Protze, M. Schulz, B. de Supinski, M. S. Müller MPI Runtime Error Detection with MUST: Advances in Deadlock Detection In Scientific Programming, Band: 21, 3-4, Seiten: 109-121, DOI: 10.3233/spr-130368, IOS Press, 2013 |
ZIH-IR-1334 | A. Köhn-Luque, W. de Back, Y. Yamaguchi, K. Yoshimura, M. Herrero, T. Miura Dynamics of VEGF matrix-retention in vascular network patterning In Physical Biology, Band: 10, 6, Seiten: 066007, ISSN: 1478-3975, DOI: 10.1088/1478-3975/10/6/066007, 2013 |
ZIH-IR-1333 | S. Srivastava, B. Malone, N. Sukhija, I. Banicescu, F. Ciorba Predicting the flexibility of dynamic loop scheduling using an artificial neural network In Seiten: 3-10, ISBN: ISBN-13 9780769550183, IEEE, 2013 |
ZIH-IR-1332 | M. Bussmann, H. Burau, T. Cowan, A. Debus, A. Huebl, G. Juckeland, T. Kluge, Wolfgang E. Nagel, R. Pausch, F. Schmitt, U. Schramm, J. Schuchart, R. Widera Radiative Signatures of the Relativistic Kelvin-Helmholtz Instability In SC '13, Seiten: 5:1--5:12, ISBN: 978-1-4503-2378-9, DOI: 10.1145/2503210.2504564, ACM, 2013 |
ZIH-IR-1331 | M. Balasubramanian, I. Banicescu, F. Ciorba Analyzing the robustness of scheduling algorithms using divisible load theory on heterogeneous systems In Seiten: 45-52, ISBN: ISBN-13 9780769550183, IEEE, 2013 |
ZIH-IR-1330 | T. Hilbrich, B. de Supinski, Wolfgang E. Nagel, J. Protze, C. Baier, M. S. Müller Distributed Wait State Tracking for Runtime MPI Deadlock Detection In SC'13, Seiten: 16:1-16:12, ISBN: 978-1-4503-2378-9, ACM, 2013 |
ZIH-IR-1329 | T. Hilbrich, F. Hänsel, M. Schulz, B. de Supinski, M. S. Müller, Wolfgang E. Nagel, J. Protze Runtime MPI Collective Checking with Tree-Based Overlay Networks In EuroMPI'13, Seiten: 129-134, ISBN: 978-1-4503-1903-4, DOI: 10.1145/2488551.2488570, ACM, 2013 |
ZIH-IR-1328 | B. Haas, A. Papanicolaou, M. Yassour, M. Grabherr, P. Blood, J. Bowden, M. Couger, D. Eccles, B. Li, M. Lieber, M. MacManes, M. Ott, J. Orvis, N. Pochet, F. Strozzi, N. Weeks, R. Westerman, T. William, C. Dewey, R. Henschel, R. LeDuc, N. Friedman, A. Regev De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis In Nat. Protocols, Band: 8, 8, Seiten: 1494-1512, ISSN: 1754-2189, DOI: 10.1038/nprot.2013.084, Nature Publishing Group, 2013 |
ZIH-IR-1327 | M. Balasubramanian, I. Banicescu, F. Ciorba Scheduling data parallel workloads - a comparative study of two common algorithmic approaches In Seiten: 798-807, ISBN: 9780769551173, IEEE, 2013 |
ZIH-IR-1326 | Wolfgang E. Nagel, R. Müller-Pfefferkorn, M. Kluge, D. Hackenberg Execution Environments for Big Data: Challenges for Storage Architectures and Software 2013 |
ZIH-IR-1325 | D. Hackenberg, R. Oldenburg, D. Molka, R. Schöne Introducing FIRESTARTER: A processor stress test utility In Seiten 1-9, DOI: 10.1109/igcc.2013.6604507, 2013 |
ZIH-IR-1324 | E. Mai, R. Geyer Numerical Orbit Integration based on Lie Series with Use of Parallel Computing Techniques In Advances in Space Research, ISSN: 0273-1177, 2013 |
ZIH-IR-1323 | S. Herres-Pawlis, A. Balasko, G. Brikenheuer, A. Brinkmann, S. Gesing, A. Hoffmann, P. Kacsuk, J. Krüger, L. Packschies, G. Terstyansky, N. Weingarten User-friendly workflows in quantum chemistry In Proceedings of the International Workshop on Scientific Gateways 2013 (IWSG), 2013 |
ZIH-IR-1322 | A. Hoffmann, S. Herres-Pawlis, S. Gesing, L. de la Garza, J. Krüger, R. Grunzke User-friendly metaworkflows in quantum chemistry 2013 |
ZIH-IR-1321 | S. Herres-Pawlis, A. Hoffmann, R. Grunzke, L. Packschies Orbital analysis of oxo and peroxo dicopper complexes via quantum chemical workflows in MoSGrid In Proceedings of the International Workshop on Scientific Gateways 2013 (IWSG), 2013 |
ZIH-IR-1319 | C. Bérard, M. Seifert, T. Mary-Huard, M. Martin-Magniette MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates In BMC Bioinformatics, Vol. 14, 1, pages 271, ISSN: 1471-2105, DOI: 10.1186/1471-2105-14-271, 2013 |
ZIH-IR-1318 | M. Wagner, J. Doleschal, Wolfgang E. Nagel, A. Knüpfer Runtime message uniquification for accurate communication analysis on incomplete MPI event traces In EuroMPI '13, Seiten 123--128, ISBN: 978-1-4503-1903-4, 2013 |
ZIH-IR-1317 | W. de Back, R. Zimm, L. Brusch Transdifferentiation of pancreatic cells by loss of contact-mediated signaling In BMC Systems Biology, Band 7, Seite 77, 2013 |
ZIH-IR-1316 | A. Kupinski, I. Raabe, M. Michel, D. Ail, L. Brusch, T. Weidemann, C. Bökel Phosphorylation of the Smo tail is controlled by membrane localization and is dispensable for clustering In Journal of Cell Science, Band. 126, 20, Seiten: 4684-4697, ISSN: 0021-9533, 1477-9137, 2013 |
ZIH-IR-1315 | R. Schöne, D. Molka Integrating performance analysis and energy efficiency optimizations in a unified environment In Computer Science - Research and Development, Seiten 1-9, ISSN: 1865-2034, Springer Berlin Heidelberg, 2013 |
ZIH-IR-1314 | S. Srivastava, B. Malone, N. Sukhija, I. Banicescu, F. Ciorba Predicting the Flexibility of Dynamic Loop Scheduling Using an Artificial Neural Network In Proceedings of the 12th International Symposium on Parallel and Distributed Computing (ISPDC 2013), ISBN: ISBN-13 9780769550183, IEEE, 2013 |
ZIH-IR-1313 | A. Cristofori, J. Nilsen, J. Gordon, M. Jones, J. Kennedy, R. Müller-Pfefferkorn Usage Record - Format Recommendation In OGF Document Series, Nr.: 204, Open Grid Forum, 2013 |
ZIH-IR-1312 | H. Jensen, J. Nilsen, P. Millar, R. Müller-Pfefferkorn, Z. Molnar, R. Zappi EMI StAR – Definition of a Storage Accounting Record In OGF Document Series, Nr.: 201, Open Grid Forum, 2013 |
ZIH-IR-1311 | D. Hackenberg, T. Ilsche, R. Schöne, D. Molka, M. Schmidt, Wolfgang E. Nagel Power measurement techniques on standard compute nodes: A quantitative comparison In IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS), Band 0, Seiten 194-204, ISBN: 978-1-4673-5776-0, IEEE Computer Society, 2013 |
ZIH-IR-1310 | M. Daivandy, D. Hünich, R. Jäkel, S. Metzger, R. Müller-Pfefferkorn, B. Schuller Heterogeneous resource federation with a centralized security model for information extraction In Journal of Internet Services and Applications, Band: 4, Nr.: 1, Seite 10, ISSN: 1869-0238, 2013 |
ZIH-IR-1309 | I. Banicescu, F. Ciorba, S. Srivastava Scalable Computing: Theory and Practice In Chapter 22, Seiten 437-466, John Wiley&Sons,Inc., 2013 |
ZIH-IR-1308 | D. Cattoni, O. Chara, C. Godefroy, E. Margeat, S. Trigueros, P. Milhiet, M. Nöllmann SpoIIIE mechanism of directional translocation involves target search coupled to sequence-dependent motor stimulation In EMBO reports, Vol. 14, 5, pages 473--479, ISSN: 1469-{221X}, DOI: 10.1038/embor.2013.39, 2013 |
ZIH-IR-1307 | L. Schäfer, J. Klump, R. Bertelmann, C. Engelhardt, H. Enke, J. Klar, K. Köhler, D. Koudela, M. Lautenschlager, J. Ludwig, H. Neuroth, R. Müller-Pfefferkorn, T. Rathmann, S. Strathmann, D. van Uytvanck, P. Wittenburg Informationsdienstleister oder Mauerblümchen – neue Rollen für akademische Bibliotheken Im Tagungsband des 5. Kongress Bibliothek & Information „Wissenswelten neu gestalten“, Leipzig, 2013 |
ZIH-IR-1306 | L. Schäfer, J. Klump, J. Klar, H. Enke, T. Rathmann, S. Strathmann, C. Engelhardt, D. Koudela, R. Müller-Pfefferkorn, K. Köhler, D. van Uytvanck Anforderungen an eine disziplin-übergreifende Forschungsdaten-Infrastruktur In Proceedings des 13. Internationalen Symposiums für Informationswissenschaft (ISI 2013), Potsdam, 19. bis 22. März 2013, Seiten: 468-470, Hülsbusch, Ort: Glückstadt, ISBN: 978-3-86488-035-3, 2013 |
ZIH-IR-1305 | J. Protze, T. Hilbrich, B. R. de Supinski, M. Schulz, M. S. Müller MPI Runtime Error Detection with MUST: Advanced Error Reports In Tools for High Performance Computing 2012, Seiten 25-38, ISBN: 978-3-642-37348-0, Springer Berlin Heidelberg , 2013 |
ZIH-IR-1304 | H. Luksch, M. J. Romanowski, O. Chara, V. Tüngler, E. R. Caffarena, M. C. Heymann, P. Lohse, I. Aksentijevich, E. F. Remmers, S. Flecks, N. Quoos, J. Gramatte, C. Petzold, S. R. Hofmann, S. Winkler, F. Pessler, T. Kallinich, G. Ganser, A. Nirntz-Talaska, U. Baumann, V. Runde, B. Grimbacher, J. Birmelin, M. Gahr, J. Roesler, A. Rösen-Wolff Naturally occurring genetic variants of human caspase-1 differ considerably in structure and the ability to activate interleukin-1β In Human Mutation, Band 34, Seiten: 122 - 131, ISSN: 1098-1004, DOI: 10.1002/humu.22169, 2013 |
ZIH-IR-1303 | V. Tüngler, W. Staroske, B. Kind, M. Dobrick, S. Kretschmer, F. Schmidt, C. Krug, M. Lorenz, O. Chara, P. Schwille, M. Lee-Kirsch Single-stranded nucleic acids promote {SAMHD1} complex formation In Journal of Molecular Medicine, Seiten: 1 - 12, ISSN: 0946-2716, 1432-1440, 2013 |
ZIH-IR-1302 | M. Ozu, H. Alvarez, A. McCarthy, J. Grigera, O. Chara Molecular dynamics of water in the neighborhood of aquaporins In European Biophysics Journal, Seiten: 1 - 17, ISSN: 0175-7571, 1432-1017, 2013 |
ZIH-IR-1301 | N. Hohmann, A. Voß-Böhme The epidemiological consequences of leprosy-tuberculosis co-infection In Mathematical Biosciences, Band 241, Seiten: 225 – 237, 2013 |