Publications of the Plant Genomics Group

Covers

Cover of our protocol book "Plant Cytogenetics and Cytogenomics in the "Methods in Molecular Biology" series. Learn more

Cover zu unserem Artikel über Cassandra-Retrotransposons: Dies sindtransponible Elemente, welche die Promoter-Struktur der 5S-rDNA eingefangen haben und mitnutzen.

Cover to our article on Cassandra retrotransposons: These are transposable elements that have captured the promoter structure of the 5S rDNA. Learn more

Cover zu unserem Artikel zur Herkunft des Safran-Krokus.

Cover for our article that unravels the genetic origin of saffron crocus. Learn more

Preprints and accepted articles

W. Kim, N. Schmidt, M. Jost, E. M. Mkala, S. Winkler, G.-W. Hu, T. Heitkam and S. Wanke (2024): "Diverging repeatomes in holoparasitic Hydnoraceae uncover a playground of genome evolution", bioRxiv, doi: 10.1101/2024.12.09.626742.

Sielemann K., Schmidt N., Guzik J., Kalina N., Pucker B., Viehöver P., Breitenbach S., Weisshaar B., Heitkam T.and Holtgräwe D. (2023): "Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet", bioRxiv, doi: 10.1101/2023.06.28.546919.

Publications

40 Entries

2021

TE Hub: a community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotationTE Hub Consortium, Elliott, T. A., Heitkam, T., Hubley, R., Quesneville, H., Suh, A. & Wheeler, T. J., 21 Jun 2021, In: Mobile DNA. 12, 1, 16Electronic (full-text) versionResearch output: Contribution to journal > Comment/Debate
The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: recombination and re-shuffling lead to a high structural variabilityMaiwald, S., Weber, B., Seibt, K. M., Schmidt, T. & Heitkam, T., 1 Jan 2021, In: Annals of Botany. 127, 1, p. 91-109, 19 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article
Application of retrotransposon-based Inter-SINE Amplified Polymorphism (ISAP) markers for the differentiation of common poplar genotypesReiche, B., Kögler, A., Morgenstern, K., Brückner, M., Weber, B., Heitkam, T., Seibt, K. M. & 5 others, 2021, In: Canadian Journal of Forest Research. 51, 11, p. 1650-1663, 14 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article

2020

Divergence of 3' ends as a driver of short interspersed nuclear element (SINE) evolution in the SalicaceaeKögler, A., Seibt, K. M., Heitkam, T., Morgenstern, K., Reiche, B., Brückner, M., Wolf, H. & 2 others, Jul 2020, In: The plant journal. 103, 1, p. 443-458, 16 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article
Satellite DNA landscapes after allotetraploidization of quinoa (Chenopodium quinoa) reveal unique A and B subgenomesHeitkam, T., Weber, B., Walter, I., Liedtke, S., Ost, C. & Schmidt, T., Jul 2020, In: The plant journal. 103, 1, p. 32-52, 21 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article
Bioinformatic and Molecular Analysis of Satellite Repeat Diversity in Vaccinium GenomesSultana, N., Menzel, G., Heitkam, T., Kojima, K. K., Bao, W. & Serçe, S., 9 May 2020, In: Genes. 11, 5Electronic (full-text) versionResearch output: Contribution to journal > Research article
The conserved 3' Angio-domain defines a superfamily of short interspersed nuclear elements (SINEs) in higher plantsSeibt, K. M., Schmidt, T. & Heitkam, T., Feb 2020, In: The plant journal. 101, 3, p. 681-699, 19 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article
Balancing Retrospection and Visions: The Cytogenetics Group of the Society of Plant Breeding (GPZ) Came Together in DresdenHeitkam, T., 14 Jan 2020, In: Cytogenetic and genome research. 159, 4, p. 163-168, 6 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article

2019

Satellite DNA landscapes after allotetraploidisation of quinoa (Chenopodium quinoa) reveal unique A and B subgenomesHeitkam, T., Weber, B., Walter, I., Ost, C. & Schmidt, T., 23 Sep 2019, In: The Plant JournalElectronic (full-text) versionResearch output: Contribution to journal > Research article
Adding color to a century-old enigma: multi-color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus cartwrightianus cytotypesSchmidt, T., Heitkam, T., Liedtke, S., Schubert, V. & Menzel, G., Jun 2019, In: New Phytologist. 222, 4, p. 1965-1980, 16 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article