Publications of the Plant Genomics Group
Covers
Preprints
S. Taniguchi, S. Ishiguro, N. Schmidt, M. Jost, S. Wanke, T. Heitkam, N. Ohmido (2024): "Repeatome landscapes and cytogenetics of hortensias provide a framework to trace Hydrangea evolution and domestication", bioRxiv, doi: 10.1101/2024.06.05.597687.
N.-A. Ankrah, A. El-nagish, S. Breitenbach, A. Tetteh, T. Heitkam (2023): “Comparative cytogenetics of kenaf (Hibiscus cannabinus L.) breeding lines reveals chromosomal instability and variability”, bioRxiv, doi: 10.1101/2023.11.18.567672.
Sielemann K., Schmidt N., Guzik J., Kalina N., Pucker B., Viehöver P., Breitenbach S., Weisshaar B., Heitkam T. and Holtgräwe D. (2023): "Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet", bioRxiv, doi: 10.1101/2023.06.28.546919.
Publications
2022
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Ancient Artworks and Crocus Genetics Both Support Saffron's Origin in Early Greece , 25 Feb 2022, In: Frontiers in plant science. 13, p. 834416, 834416Electronic (full-text) versionResearch output: Contribution to journal > Review article
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Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives , 10 Feb 2022, In: BMC genomics. 23, 1, 17 p., 113Electronic (full-text) versionResearch output: Contribution to journal > Research article
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ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data , 14 Jan 2022, In: BMC bioinformatics. 23, 1, p. 23-40, 15 p., 40Electronic (full-text) versionResearch output: Contribution to journal > Research article
2021
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Can we have it all?: Repurposing target capture for repeat genomics. A commentary on: 'Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA' , 9 Nov 2021, In: Annals of Botany. 128, 7, p. iii-vElectronic (full-text) versionResearch output: Contribution to journal > Research article
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Broken, silent, and in hiding: tamed endogenous pararetroviruses escape elimination from the genome of sugar beet (Beta vulgaris) , 26 Aug 2021, In: Annals of Botany. 128, 3, p. 281-299, 19 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article
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TE Hub: a community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation , 21 Jun 2021, In: Mobile DNA. 12, 1, p. 16Electronic (full-text) versionResearch output: Contribution to journal > Research article
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The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: recombination and re-shuffling lead to a high structural variability , 1 Jan 2021, In: Annals of Botany. 127, 1, p. 91-109, 19 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article
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Comparative Repeat Profiling of Two Closely Related Conifers (Larix decidua and Larix kaempferi) Reveals High Genome Similarity With Only Few Fast-Evolving Satellite DNAs , 2021, In: Frontiers in genetics. 12, p. 683668Electronic (full-text) versionResearch output: Contribution to journal > Research article
2020
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Divergence of 3' ends as a driver of short interspersed nuclear element (SINE) evolution in the Salicaceae , Jul 2020, In: The plant journal. 103, 1, p. 443-458, 16 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article
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Satellite DNA landscapes after allotetraploidization of quinoa (Chenopodium quinoa) reveal unique A and B subgenomes , Jul 2020, In: The plant journal. 103, 1, p. 32-52, 21 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article