Publications of the Plant Genomics Group

Covers

Cover of our protocol book "Plant Cytogenetics and Cytogenomics in the "Methods in Molecular Biology" series. Learn more

Cover zu unserem Artikel über Cassandra-Retrotransposons: Dies sindtransponible Elemente, welche die Promoter-Struktur der 5S-rDNA eingefangen haben und mitnutzen.

Cover to our article on Cassandra retrotransposons: These are transposable elements that have captured the promoter structure of the 5S rDNA. Learn more

Cover zu unserem Artikel zur Herkunft des Safran-Krokus.

Cover for our article that unravels the genetic origin of saffron crocus. Learn more

Preprints and articles in press

A. El-nagish, S. Liedtke, S. Breitenbach and T. Heitkam (2024): "Preparing high-quality chromosome spreads from Crocus species for karyotyping and FISH", bioRxiv, doi: 10.1101/2024.11.18.624136. read preprint

N. Schmidt, S. Maiwald, L. Mann, B. Weber, K. M. Seibt, S. Breitenbach, S. Liedtke, G. Menzel, B. Weisshaar, D. Holtgräwe, T. Heitkam (2024): “BeetRepeats: reference sequences for genome and polymorphism annotation in sugar beet and wild relatives”, in press at BMC Research Notes , doi: 10.1186/s13104-024-06993-4.
The database of beet repeat sequences can be already accessed via Zenodo: 10.5281/zenodo.8255813.

S. Ishiguro, S. Taniguchi, N. Schmidt, M. Jost, S. Wanke, T. Heitkam, N. Ohmido (2024): "Repeatome landscapes and cytogenetics of hortensias provide a framework to trace Hydrangea evolution and domestication", in press at Annals of Botany.
Read the corresponding preprint: bioRxiv, doi: 10.1101/2024.06.05.597687.

Sielemann K., Schmidt N., Guzik J., Kalina N., Pucker B., Viehöver P., Breitenbach S., Weisshaar B., Heitkam T.and Holtgräwe D. (2023): "Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet", bioRxiv, doi: 10.1101/2023.06.28.546919.

Publications

37 Entries

2014

TE-Tracker: systematic identification of transposition events through whole-genome resequencingGilly, A., Etcheverry, M., Madoui, M., Guy, J., Quadrana, L., Alberti, A., Martin, A. & 7 others, 19 Nov 2014, In: BMC bioinformatics. 15, p. 377Electronic (full-text) versionResearch output: Contribution to journal > Research article
Profiling of extensively diversified plant LINEs reveals distinct plant-specific subcladesHeitkam, T., Holtgräwe, D., Dohm, J. C., Minoche, A. E., Himmelbauer, H., Weisshaar, B. & Schmidt, T., Aug 2014, In: The plant journal. 79, 3, p. 385-97, 13 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article

2013

Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integrationWeber, B., Heitkam, T., Holtgräwe, D., Weisshaar, B., Minoche, A. E., Dohm, J. C., Himmelbauer, H. & 1 others, 1 Mar 2013, In: Mobile DNA. 4, 1, p. 8Electronic (full-text) versionResearch output: Contribution to journal > Research article

2012

Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genomeWollrab, C., Heitkam, T., Holtgräwe, D., Weisshaar, B., Minoche, A. E., Dohm, J. C., Himmelbauer, H. & 1 others, Nov 2012, In: The plant journal. 72, 4, p. 636-51, 16 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article

2011

Comparative physical mapping of rearranged and normal plant chromosomes by high-resolution FISH and megabase DNA techniquesSchmidt, T., Dechyeva, D., Fiege, C., Heitkam, T., Menzel, G., Weber, B., Wenke, T. & 1 others, 2011, Physical Mapping Technologies for the Identification and Characterization of Mutated Genes Contributing to Crop Quality. p. 9-15Electronic (full-text) versionResearch output: Contribution to book/conference proceedings/anthology/report > Conference contribution

2010

The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and ageWeber, B., Wenke, T., Frömmel, U., Schmidt, T. & Heitkam, T., Feb 2010, In: Chromosome Research. 18, 2, p. 247-63, 17 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article

2009

BNR - a LINE family from Beta vulgaris - contains a RRM domain in open reading frame 1 and defines a L1 sub-clade present in diverse plant genomesHeitkam, T. & Schmidt, T., Sep 2009, In: The plant journal. 59, 6, p. 872-82, 11 p.Electronic (full-text) versionResearch output: Contribution to journal > Research article