Completed PhDs
28. Ali Al-Fatlawi. AI improves cancer biomarker discovery and enables remote homology inference. 2025
27. Negin Malekian. Exploring the Genomic Basis of Antibiotic Resistance in Wastewater E. coli: Positive Selection, GWAS, and AI Language Model Analyses. 2023
26. Mahmood Nazari. Improving nuclear medicine with deep learning and explainability: two real-world use cases in parkinsonian syndrome and safety dosimetry. 2022
25. Melissa F. Adasme. Structure-based drug repositioning by exploiting structural properties of drug's binding mode. Summa cum laude. 2021
24. Sebastian Salentin. In Silico Identification of Novel Cancer Drugs with 3D Interaction Profiling. Summa cum laude. 2017
23. Norhan Mahfouz. Quantifying the antibiotic resistance potential of wastewater E. coli. 2017
22. Sainitin Donakonda. Prediction and validation of novel compounds binding the cancer target HSPB1. 2015
21. Maria Kissa. Cassandra: drug gene association prediction via text mining and ontologies. 2015
20. Eleni Christodoulou. Detection of KRAS Synthetic Lethal Partners through Integration of existing RNAi Screens. 2015
19. Simone Daminelli. Drug repositioning with incomplete bi-cliques and structural bioinformatics. 2014
18. Joachim Haupt. Protein binding site similarity as driver for drug repositioning. 2014
17. Janine Roy. From correlation to causality: Outcome prediction in cancer. Summa cum laude. 2014
16. Daniel Eisinger. Automated Patent Categorisation and Guided Patent Search using IPC as inspired by MeSH and PubMed. 2013
15. Rainer Winnenburg. Mutations and their role in protein interactions and diseases: Computational methods for automated retrieval, analysis, and application. 2011
14. Conrad Plake. Gene annotation by automated literature analysis with an application to drug-target interaction prediction. 2010
13. Loic Royer. Unravelling the structure and assessing the quality of protein networks with power graphs. Summa cum laude. 2010
12. Thomas Wächter. Semi-automated ontology generation for biocuration and semantic search. Summa cum laude. 2010
11. Heiko Dietze. GoWeb: Semantic search and browsing for the life sciences. 2010
10. Dimitra Alexopoulou. Word-sense disambiguation in biomedical ontologies. 2010
9. Annalisa Marsico. Discovery and characterization of new structure and function motifs in alpha-helical transmembrane proteins with an application to interpret Single Molecule Force Spectroscopy data. Summa cum laude. 2009
8. Christof Winter. Protein interactions in disease: Using structural protein interaction and regulatory networks to predict disease-related mechanisms. Summa cum laude. 2009
7. Gihan Dawelbait. From cancer gene expression to protein interaction: Interaction prediction, network reasoning and applications in pancreatic cancer. 2009
6. Andreas Doms. GoPubMed:ontology-based literature search for life sciences. Summa cum laude. 2008
5. Andreas Henschel. A structural classification of protein-protein interactions for deteection Protein interactions. Summa cum laude. 2008
4. Frank Dressel. Sequenz, Energie, Struktur - Untersuchungen zur Beziehung zwischen Primär- und Tertiärstruktur in globulären und Membran-Proteinen. 2008
3. Bingding Huang. Improving protein docking with binding site prediction. 2008
2. Penny Noy. Enhancing comprehension of Complex Data Visualizations: Framework and Techniques Based on Signature Exploration. 2004.
1. Jacek Gomoluch. Market Protocols for Resource Allocation in Computational Clusters and Grids. 2003