ZIH Publications 2014
| ZIH-IR-1463 | F. Ciorba, T. Ilsche, E. Franz, S. Pfennig, C. Scheunert, U. Markwardt, J. Schuchart, D. Hackenberg, R. Schöne, A. Knüpfer, Wolfgang E. Nagel, E. Jorswieck, M. S. Müller Analysis of Parallel Applications on a High Performance -- Low Energy Computer In Euro-Par 2014: Parallel Processing Workshops, Lecture Notes in Computer Science, DOI: 10.1007/978-3-319-14313-2_40, Springer International Publishing, 2014 |
| ZIH-IR-1462 | T. Ilsche, J. Schuchart, R. Schöne, D. Hackenberg Combining Instrumentation and Sampling for Trace-Based Application Performance Analysis In Tools for High Performance Computing 2014, DOI: 10.1007/978-3-319-16012-2_6, Springer International Publishing, 2014 |
| ZIH-IR-1461 | I. Psaroudakis, T. Kissinger, D. Porobic, T. Ilsche, E. Liarou, P. Tözün, A. Ailamaki, W. Lehner Dynamic Fine-Grained Scheduling for Energy-Efficient Main-Memory Queries In Proceedings of the Tenth International Workshop on Data Management on New Hardware, DaMoN '14, DOI: 10.1145/2619228.2619229, ACM, 2014 |
| ZIH-IR-1460 | S. Götz, T. Ilsche, J. Cardoso, J. Spillner, U. Aßmann, Wolfgang E. Nagel, A. Schill Energy-Efficient Data Processing at Sweet Spot Frequencies In On the Move to Meaningful Internet Systems: OTM 2014 Workshops, Vol. 8842, Lecture Notes in Computer Science, DOI: 10.1007/978-3-662-45550-0_18, Springer Berlin Heidelberg, 2014 |
| ZIH-IR-1459 | S. Götz, T. Ilsche, J. Cardoso, J. Spillner, T. Kissinger, U. Aßmann, W. Lehner, Wolfgang E. Nagel, A. Schill Energy-Efficient Databases Using Sweet Spot Frequencies In 2014 IEEE/ACM 7th International Conference on Utility and Cloud Computing (UCC 2014), DOI: 10.1109/UCC.2014.142, 2014 |
| ZIH-IR-1458 | S. Pfennig, E. Franz, F. Ciorba, T. Ilsche, Wolfgang E. Nagel Modeling Communication Delays for Network Coding and Routing for Error-Prone Transmission In 2014 Third International Conference on Future Generation Communication Technology (FGCT), DOI: 10.1109/FGCT.2014.6933231, 2014 |
| ZIH-IR-1457 | S. Oeste, A. Knüpfer, T. Ilsche Towards Parallel Performance Analysis Tools for the OpenSHMEM Standard In OpenSHMEM and Related Technologies. Experiences, Implementations, and Tools, Vol. 8356, Lecture Notes in Computer Science, DOI: 10.1007/978-3-319-05215-1_7, Springer International Publishing, 2014 |
| ZIH-IR-1456 | T. Ilsche, J. Schuchart, J. Cope, D. Kimpe, T. Jones, A. Knüpfer, K. Iskra, R. Ross, Wolfgang E. Nagel, S. Poole Optimizing I/O forwarding techniques for extreme-scale event tracing In Cluster Computing, ISSN: 1386-7857, 2014 |
| ZIH-IR-1455 | M. Beck, V. Haupt, J. Roy, J. Moennich, R. Jäkel, M. Schroeder, Z. Isik Privacy-Preserving Cloud Computing for Biomedical Research In Trusted Cloud Computing, DOI: 10.1007/978-3-319-12718-7_16, Springer International Publishing, 2014 |
| ZIH-IR-1454 | K. Feldhoff, M. Flehmig, U. Markwardt, Wolfgang E. Nagel, M. Schutte, A. Walther SCADOPT: An Open-Source HPC Framework for Solving PDE Constrained Optimization Problems Using AD In High Performance Computing and Communications, 2014 IEEE 6th Intl Symp on Cyberspace Safety and Security, 2014 IEEE 11th Intl Conf on Embedded Software and Syst (HPCC,CSS,ICESS), 2014 IEEE Intl Conf on, DOI: 10.1109/hpcc.2014.15, 2014 |
| ZIH-IR-1453 | M. Flehmig, K. Feldhoff, U. Markwardt ScaFES: An Open-Source Framework for Explicit Solvers Combining High-Scalability with User-Friendliness In Architecture of Computing Systems (ARCS), 2014 27th International Conference on, 2014 |
| ZIH-IR-1452 | M. Kluge, A. Knüpfer, R. Müller-Pfefferkorn, Wolfgang E. Nagel Holistic Performance Analysis for BDEC Systems– a Big Data Challenge?! 2014 |
| ZIH-IR-1451 | K. Fürlinger, C. Glass, J. Gracia, A. Knüpfer, T. Jie, D. Hünich, K. Idrees, M. Maiterth, Y. Mhedheb, H. Zhou DASH: Data Structures and Algorithms with Support for Hierarchical Locality In Euro-Par 2014: Parallel Processing Workshops, Vol. 8806, DOI: 10.1007/978-3-319-14313-2_46, 2014 |
| ZIH-IR-1450 | N. Sukhija, B. Malone, S. Srivastava, I. Banicescu, F. Ciorba A learning-based selection for portfolio scheduling of scientific applications on heterogeneous computing systems In Parallel and Cloud Computing, Vol. 3, 4, 2014 |
| ZIH-IR-1449 | M. Balasubramanian, I. Banicescu, F. Ciorba Scalability analysis and evaluation of divisible load scheduling In 10th International Workshop on Scheduling and Resource Management for Parallel and Distributed Systems (SRMPDS 2014) of the 43rd International Conference on Parallel Processing (ICPP 2014), 2014 |
| ZIH-IR-1448 | N. Sukhija, B. Malone, S. Srivastava, I. Banicescu, F. Ciorba A learning-based selection for portfolio scheduling of scientific applications on heterogeneous computing systems In Parallel and Cloud Computing, Band: 3, 4, 2014 |
| ZIH-IR-1447 | G. Juckeland, W. Brantley, S. Chandrasekaran, B. Chapman, S. Che, M. Colgrove, H. Feng, A. Grund, R. Henschel, W. Hwu, H. Li, M. S. Müller, Wolfgang E. Nagel, M. Perminov, P. Shelepugin, K. Skadron, J. Stratton, A. Titov, K. Wang, M. van Waveren, B. Whitney, S. Wienke, R. Xu, K. Kumaran SPEC ACCEL: A Standard Application Suite for Measuring Hardware Accelerator Performance In Proceedings of the 5th International Workshop on Performance Modeling, Benchmarking and Simulation of High Performance Computer System (PMBS 2014), 2014 |
| ZIH-IR-1446 | T. Hilbrich, J. Protze, M. Wagner, M. S. Müller, M. Schulz, B. de Supinski, Wolfgang E. Nagel Memory Usage Optimizations for Online Event Analysis In Solving Software Challenges for Exascale, EASC '14, 2014 |
| ZIH-IR-1445 | J. Protze, T. Hilbrich, M. Schulz, B. de Supinski, Wolfgang E. Nagel, M. S. Müller MPI Runtime Error Detection with MUST: A Scalable and Crash-Safe Approach In 43nd International Conference on Parallel Processing (ICPP), Fifth International Workshop on Parallel Software Tools and Tool Infrastructures, IEEE Computer Society, 2014 |
| ZIH-IR-1444 | M. Wagner, T. Hilbrich, H. Brunst Online Performance Analysis: An Event-based Workflow Design Towards Exascale In The 16th IEEE International Conference on High Performance Computing and Communications, HPCC 2014, 2014 |
| ZIH-IR-1443 | J. Münchhalfen, T. Hilbrich, J. Protze, C. Terboven, M. S. Müller Classification of Common Errors in OpenMP Applications In Using and Improving OpenMP for Devices, Tasks, and More, Vol. 8766, Lecture Notes in Computer Science, DOI: 10.1007/978-3-319-11454-5_5, Springer International Publishing, 2014 |
| ZIH-IR-1442 | R. Grunzke, S. Breuers, S. Gesing, S. Herres-Pawlis, M. Kruse, D. Blunk, L. de la Garza, L. Packschies, P. Schäfer, C. Schärfe, T. Schlemmer, T. Steinke, B. Schuller, R. Müller-Pfefferkorn, R. Jäkel, Wolfgang E. Nagel, M. Atkinson, J. Krüger Standards-based Metadata Management for Molecular Simulations In Concurrency and Computation: Practice and Experience, Vol. 26(10), DOI: 10.1002/cpe.3116, 2014 |
| ZIH-IR-1441 | R. Grunzke, R. Müller-Pfefferkorn Certificate-free User-friendly HPC Access with UNICORE In UNICORE Summit 2014 Proceedings, Vol. 26, IAS Series, ISBN: 978-3-95806-004-3, 2014 |
| ZIH-IR-1440 | R. Dietrich, F. Schmitt, A. Grund, D. Schmidl Performance Measurement for the OpenMP 4.0 Offloading Model In Proceedings of the 7th Workshop on Productivity and Performance, PROPER'14, 2014 |
| ZIH-IR-1439 | F. Schmitt, R. Dietrich, G. Juckeland Scalable Critical Path Analysis for Hybrid MPI-CUDA Applications In Proceedings of the 2014 IEEE International Parallel \& Distributed Processing Symposium Workshops, IPDPSW '14, DOI: 10.1109/ipdpsw.2014.103, IEEE Computer Society, 2014 |
| ZIH-IR-1438 | F. Schmitt, R. Dietrich, R. Kuß, J. Doleschal, A. Knüpfer Visualization of Performance Data for MPI Applications Using Circular Hierarchies In Proceedings of the First Workshop on Visual Performance Analysis, VPA '14, DOI: 10.1109/vpa.2014.5, IEEE Press, 2014 |
| ZIH-IR-1437 | M. Hartung, M. Kluge Mapping of RAID Controller Performance Data to the Job History on Large Computing Systems In Proceedings of the 2014 International Workshop on Data Intensive Scalable Computing Systems, DISCS '14, DOI: 10.1109/discs.2014.7, IEEE Press, 2014 |
| ZIH-IR-1436 | D. Hackenberg, T. Ilsche, J. Schuchart, R. Schöne, Wolfgang E. Nagel, M. Simon, Y. Georgiou HDEEM: High Definition Energy Efficiency Monitoring In International Workshop on Energy Efficient Supercomputing (E2SC), DOI: 10.1109/e2sc.2014.13, IEEE Press, 2014 |
| ZIH-IR-1435 | S. Gesing, J. Krüger, R. Grunzke, L. de la Garza, S. Herres-Pawlis, A. Hoffmann Molecular Simulation Grid (MosGrid): A Science Gateway Tailored to the Molecular Simulation Community In Science Gateways for Distributed Computing Infrastructures, DOI: 10.1007/978-3-319-11268-8_11, Springer International Publishing, 2014 |
| ZIH-IR-1434 | M. Lieber, Wolfgang E. Nagel Scalable high-quality 1D partitioning In High Performance Computing Simulation (HPCS), 2014 International Conference on, DOI: 10.1109/hpcsim.2014.6903676, 2014 |
| ZIH-IR-1433 | O. Wolkenhauer, C. Auffray, O. Brass, J. Clairambult, A. Deutsch, D. Drasdo, F. Gervasio, L. Preziosi, P. Maini, A. Marciniak-Czochra, C. Kossow, L. Kuepfer, K. Rateitschak, I. Ramis-Conde, B. Ribba, A. Schuppert, R. Smallwood, G. Stamatakos, F. Winter, H. Byrne Enabling multiscale modeling in systems medicine In Genome Medicine, Vol. 6, 3, DOI: 10.1186/gm538, 2014 |
| ZIH-IR-1432 | K. Bohl, S. Hummert, S. Werner, D. Basanta, G. Theißen, S. Schuster, A. Schroeter, A. Deutsch Evolutionary game theory: molecules as players In Mol. BioSyst., Vol. 10, DOI: 10.1039/C3MB70601J, 2014 |
| ZIH-IR-1431 | S. Hummert, D. Basanta, A. Deutsch, S. Werner, G. Theißen, A. Schroeter, S. Schuster, K. Bohl Evolutionary game theory: cells as players In Mol. BioSyst., Vol. 10, DOI: 10.1039/C3MB70602H, 2014 |
| ZIH-IR-1430 | M. Wagner, J. Doleschal, A. Knüpfer, Wolfgang E. Nagel Selective Runtime Monitoring: Non-intrusive Elimination of High-frequency Functions In High Performance Computing Simulation (HPCS), 2014 International Conference on, DOI: 10.1109/hpcsim.2014.6903698, 2014 |
| ZIH-IR-1429 | A. Aguilera, H. Mickler, J. Kunkel, M. Zimmer, M. Wiedemann, R. Müller-Pfefferkorn A Comparison of Trace Compression Methods for Massively Parallel Applications in Context of the SIOX Project In Tools for High Performance Computing 2013, ISSN: ISBN 978-3-319-08143-4, 2014 |
| ZIH-IR-1428 | F. Rost, C. Eugster, C. Schröter, A. Oates, L. Brusch Chevron formation of the zebrafish muscle segments In The Journal of Experimental Biology, Vol. 217, 21, DOI: 10.1242/jeb.102202, 2014 |
| ZIH-IR-1427 | O. Chara, E. Tanaka, L. Brusch Chapter Ten - Mathematical Modeling of Regenerative Processes In Vol. 108, Current Topics in Developmental Biology, pages 283 - 317, ISSN: 0070-2153, DOI: 10.1016/b978-0-12-391498-9.00011-5, Academic Press, 2014 |
| ZIH-IR-1426 | D. Hackenberg The Plenum concept: Improving scalability, security, and efficiency for data centers In IEEE Intersociety Conference on Thermal and Thermomechanical Phenomena in Electronic Systems (ITherm), DOI: 10.1109/ITHERM.2014.6892408, 2014 |
| ZIH-IR-1425 | S. Herres-Pawlis, A. Hoffmann, L. De La Garza, J. Krüger, S. Gesing, R. Grunzke, Wolfgang E. Nagel, G. Terstyansky, N. Weingarten Meta-Metaworkflows for Combining Quantum Chemistry and Molecular Dynamics in the MoSGrid Science Gateway In pages 73-78, DOI: 10.1109/iwsg.2014.20, 2014 |
| ZIH-IR-1424 | S. Herres-Pawlis, A. Hoffmann, L. De La Garza, J. Krüger, R. Grunzke Expansion of Quantum Chemical Metadata for Workflows in the MoSGrid Science Gateway In pages 67-72, DOI: 10.1109/iwsg.2014.18, 2014 |
| ZIH-IR-1423 | R. Müller, M. Kampschulte, T. El Khassawna, G. Schlewitz, B. Hürter, W. Böcker, M. Bobeth, A. Langheinrich, C. Heiss, A. Deutsch, G. Cuniberti Change of mechanical vertebrae properties due to progressive osteoporosis: combined biomechanical and finite-element analysis within a rat model In Med. Biol. Eng. Comput., Vol. 52, 4, pages 405-414, DOI: 10.1007/s11517-014-1140-3, 2014 |
| ZIH-IR-1422 | K. Zhuravleva, R. Müller, L. Schultz, J. Eckert, A. Gebert, M. Bobeth, G. Cuniberti Determination of the Young’s modulus of porous ß-type Ti–40Nb by finite element analysis In J. Mat. Des., Vol. 64, pages 1-8, DOI: 10.1016/j.matdes.2014.07.027, 2014 |
| ZIH-IR-1421 | A. Hoffmann, R. Grunzke, S. Herres-Pawlis Insights into the influence of dispersion correction in the theoretical treatment of guanidine-quinoline copper(I) complexes In Journal of Computational Chemistry, ISSN: 1096-987X, DOI: 10.1002/jcc.23706, 2014 |
| ZIH-IR-1420 | R. Grunzke, S. Gesing, R. Jäkel, Wolfgang E. Nagel Towards Generic Metadata Management in Distributed Science Gateway Infrastructures In IEEE/ACM CCGrid 2014 (14th International Symposium on Cluster, Cloud and Grid Computing), DOI: 10.1109/ccgrid.2014.98, 2014 |
| ZIH-IR-1419 | R. Schöne, D. Molka, M. Werner Wake-up latencies for processor idle states on current x86 processors In Computer Science - Research and Development, pages 1-9, ISSN: 1865-2034, DOI: 10.1007/s00450-014-0270-z, Springer Berlin Heidelberg, 2014 |
| ZIH-IR-1418 | M. Seifert, K. Abou-El-Ardat, B. Friedrich, B. Klink, A. Deutsch Autoregressive Higher-Order Hidden Markov Models: Exploiting Local Chromosomal Dependencies in the Analysis of Tumor Expression Profiles In PLoS ONE, Vol. 9, 6, pages e100295, DOI: 10.1371/journal.pone.0100295, 2014 |
| ZIH-IR-1417 | E. Levy, A. Barak, A. Shiloh, M. Lieber, C. Weinhold, H. Härtig Overhead of a Decentralized Gossip Algorithm on the Performance of HPC Applications In ROSS '14: Proceedings of the 4th International Workshop on Runtime and Operating Systems for Supercomputers, DOI: 10.1145/2612262.2612271, ACM, 2014 |
| ZIH-IR-1416 | J. Krüger, R. Grunzke, S. Herres-Pawlis, A. Hoffmann, L. de la Garza, O. Kohlbacher, Wolfgang E. Nagel, S. Gesinge Performance Studies on Distributed Virtual Screening In BioMed Research International, DOI: 10.1155/2014/624024, 2014 |
| ZIH-IR-1415 | D. Molka, D. Hackenberg, R. Schöne Main Memory and Cache Performance of Intel Sandy Bridge and AMD Bulldozer In DOI: 10.1145/2618128.2618129, ACM, 2014 |
| ZIH-IR-1414 | S. Weitz, S. Blanco, R. Fournier, J. Gautrais, C. Jost, G. Theraulaz Residence times and boundary-following behavior in animals In Phys. Rev. E, Vol. 89, 5, pages 052715, DOI: 10.1103/PhysRevE.89.052715, 2014 |
| ZIH-IR-1413 | J. Starruss, W. de Back, L. Brusch, A. Deutsch Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology In Bioinformatics, Vol. 30, 9, pages 1331-1332, DOI: 10.1093/bioinformatics/btt772, 2014 |
| ZIH-IR-1412 | S. Herres-Pawlis, A. Hoffmann, L. de la Garza, J. Krüger, S. Gesing, A. Balasko, P. Kacsuk, G. Birkenheuer, R. Grunzke, G. Terstyansky, N. Weingarten, A. Brinkmann Quantum chemical metaworkflows in MoSGrid In Concurrency and Computation: Practice and Experience, ISSN: 1532-0634, DOI: 10.1002/cpe.3292, 2014 |
| ZIH-IR-1411 | R. Grunzke, J. Krüger, S. Gesing, S. Herres-Pawlis, A. Hoffmann, L. de la Garza Improved Resilience and Usability for Science Gateway Infrastructures via Integrated Virtual Organizations 2014 |
| ZIH-IR-1410 | J. Krüger, R. Grunzke, S. Gesing, S. Breuers, A. Brinkmann, L. de la Garza, O. Kohlbacher, Wolfgang E. Nagel, M. Kruse, L. Packschies, R. Müller-Pfefferkorn, P. Schäfer, C. Schärfe, T. Steinke, T. Schlemmer, K. Warzecha, A. Zink, S. Herres-Pawlis The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations In Journal of Chemical Theory and Computation, DOI: 10.1021/ct500159h, 2014 |
| ZIH-IR-1409 | R. Grunzke, J. Hesser, J. Starek, N. Kepper, S. Gesing, M. Hardt, V. Hartmann, S. Kindermann, J. Potthoff, M. Hausmann, R. Müller-Pfefferkorn, R. Jäkel Device-driven Metadata Management Solutions for Scientific Big Data Use Cases 2014 |
| ZIH-IR-1408 | T. Hansen, F. Ciorba, A. Maciejewski, H. Siegel, S. Srivastava, I. Banicescu Heuristics for robust allocation of resources to parallel applications with uncertain execution times in heterogeneous systems with uncertain availability In 2014 International Conference of Parallel and Distributed Computing (ICPDC 2014) of the World Congress on Engineering (WCE 2014), ISBN: 9789881925275, IAENG, 2014 |
| ZIH-IR-1407 | M. Balasubramanian, I. Banicescu, F. Ciorba Robustness Prediction and Evaluation of Divisible Load Scheduling on Heterogeneous Systems with Uncertain Perturbations In 13th International Symposium on Parallel and Distributed Computing (ISPDC 2014), IEEE, 2014 |
| ZIH-IR-1406 | N. Sukhija, B. Malone, S. Srivastava, I. Banicescu, F. Ciorba Portfolio-based selection of robust dynamic loop scheduling algorithms using machine learning In 3rd International Workshop on Parallel and Distributed Computing for Large Scale Machine Learning and Big Data Analytics (ParLearning 2014) of the 28th IEEE International Parallel and Distributed Processing Symposium Workshops and PhD Forum (IPDPSW 2014), IEEE, 2014 |
| ZIH-IR-1405 | R. Schöne, J. Treibig, M. Dolz, C. Guillen, C. Navarrete, M. Knobloch, B. Rountree Tools and Methods for Measuring and Tuning the Energy Efficiency of HPC Systems In Scientific Programming,2014 |
| ZIH-IR-1404 | R. Schöne, J. Schuchart, T. Ilsche, D. Hackenberg Scalable Tools for Non-Intrusive Performance Debugging of Parallel Linux Workloads In Ottawa Linux Symposium (OLS) Proceedings, 2014 |
| ZIH-IR-1403 | N. Hohmann, W. Weiwei, U. Dahmen, O. Dirsch, A. Deutsch, A. Voss-Böhme How Does a Single Cell Know When the Liver Has Reached Its Correct Size? In PLoS ONE, Vol. 9, 4, ISSN: e93207, DOI: http://dx.doi.org/10.1371%2Fjournal.pone.0093207, 2014 |
| ZIH-IR-1402 | M. Blanco, D. Cattoni, P. Carriquiriborde, J. Grigera, O. Chara Kinetics of bioaccumulation of heavy metals in Odontesthes bonariensis is explained by a single and common mechanism In Ecological Modelling, Vol. 274, 0, pages 50 - 56, ISSN: 0304-3800, DOI: 10.1016/j.ecolmodel.2013.12.002, 2014 |
| ZIH-IR-1401 | M. Lieber, Wolfgang E. Nagel, H. Mix Scalability Tuning of the Load Balancing and Coupling Framework FD4 In Vol. 47, NIC Series, pages 363-370, ISBN: 978-3-89336-933-1, 2014 |