ZIH Publications 2015
| ZIH-IR-1543 | M. Reijns, C. Günther Defective removal of ribonucleotides from DNA promotes systemic autoimmunity In The Journal of Clinical Investigation, Vol. 125, 1, DOI: 10.1172/jci78001, The American Society for Clinical Investigation, 2015 |
| ZIH-IR-1542 | T. Ilsche, D. Hackenberg, S. Graul, J. Schuchart, R. Schöne Power Measurements for Compute Nodes: Improving Sampling Rates, Granularity and Accuracy In THE Sixth INTERNATIONAL GREEN and SUSTAINABLE COMPUTING CONFERENCE, DOI: 10.1109/IGCC.2015.7393710, 2015 |
| ZIH-IR-1541 | J. Alfonso, M. Herrero, L. Núñez A dose-volume histogram based decision-support system for dosimetric comparison of radiotherapy treatment plans In Radiation Oncology, Vol. 10, 1, DOI: 10.1186/s13014-015-0569-3, 2015 |
| ZIH-IR-1540 | M. Wagner, J. Doleschal, A. Knüpfer MPI-focused Tracing with OTFX: An MPI-aware In-memory Event Tracing Extension to the Open Trace Format 2. In EuroMPI, DOI: 10.1145/2802658.2802664, 2015 |
| ZIH-IR-1539 | R. Dietrich, G. Juckeland, M. Wolfe OpenACC Programs Examined: A Performance Analysis Approach In 44th International Conference on Parallel Processing, ICPP, DOI: 10.1109/icpp.2015.40, IEEE, 2015 |
| ZIH-IR-1538 | M. Wagner, J. Doleschal, A. Knüpfer Tracing long running applications: A case study using Gromacs. In HPCS, DOI: 10.1109/hpcsim.2015.7237031, 2015 |
| ZIH-IR-1537 | T. Cramer, R. Dietrich, C. Terboven, M. Müller, Wolfgang E. Nagel Performance Analysis for Target Devices with the OpenMP Tools Interface In 29th International Parallel and Distributed Processing Symposium Workshop, IPDPSW, DOI: 10.1109/ipdpsw.2015.27, IEEE, 2015 |
| ZIH-IR-1536 | R. Dietrich, R. Tschüter A Generic Infrastructure for OpenCL Performance Analysis In 8th International Conference on Intelligent Data Acquisition and Advanced Computing Systems, Vol. 1, Technology and Applications, DOI: 10.1109/idaacs.2015.7340754, IEEE, 2015 |
| ZIH-IR-1535 | A. Knüpfer, T. Hilbrich, J. Protze, J. Schuchart Dynamic Analysis to Support Program Development with the Textually Aligned Property for OpenSHMEM Collectives In OpenSHMEM and Related Technologies. Experiences, Implementations, and Technologies, Vol. 9397, Lecture Notes in Computer Science, DOI: 10.1007/978-3-319-26428-8_7, Springer International Publishing, 2015 |
| ZIH-IR-1534 | T. Hilbrich, M. Schulz, H. Brunst, J. Protze, B. de Supinski, M. Müller Event-Action Mappings for Parallel Tools Infrastructures In Euro-Par 2015: Parallel Processing, Vol. 9233, Lecture Notes in Computer Science, DOI: 10.1007/978-3-662-48096-0_4, Springer Berlin Heidelberg, 2015 |
| ZIH-IR-1533 | M. Weber, R. Geisler, H. Brunst, Wolfgang E. Nagel Folding Methods for Event Timelines in Performance Analysis In Parallel and Distributed Processing Symposium Workshop (IPDPSW), 2015 IEEE International, 2015 |
| ZIH-IR-1532 | C. Vincent, F. Rost, W. Masselink, L. Brusch, E. Tanaka Cellular dynamics underlying regeneration of appropriate segment number during axolotl tail regeneration In BMC Developmental Biology, Vol. 15, 1, DOI: 10.1186/s12861-015-0098-1, 2015 |
| ZIH-IR-1531 | D. Hünich, A. Knüpfer, J. Gracia Providing Parallel Debugging for DASH Distributed Data Structures with GDB In Proceedings of the International Conference on Computational Science, {ICCS} 2015, Computational Science at the Gates of Nature, Reykjavík, Iceland, 1-3 June, 2015, 2014, DOI: 10.1016/j.procs.2015.05.345, 2015 |
| ZIH-IR-1530 | T. Buder, B. Klink, A. Deutsch, A. Voss-Böhme Model-based Evaluation of Spontaneous Tumor Regression in Pilocytic Astrocytoma In PLoS Computational Biology, Vol. 11, nr. 12, pages: e1004662, doi = 10.1371/journal.pcbi.1004662, 2015 |
| ZIH-IR-1529 | R. Jäkel, R. Müller-Pfefferkorn, M. Kluge, R. Grunzke, Wolfgang E. Nagel Architectural implications for exascale based on big data workflow requirements In Big Data and High Performance Computing, Vol. 26, Advances in Parallel Computing, DOI: 10.3233/978-1-61499-583-8-101, IOS Press, 2015 |
| ZIH-IR-1528 | A. Albors, A. Tazaki, F. Rost, S. Nowoshilow, O. Chara, E. Tanaka Cancer therapeutic potential of combinatorial immuno- and vasomodulatory interventions In Planar cell polarity-mediated induction of neural stem cell expansion during axolotl spinal cord regeneration, 2015 |
| ZIH-IR-1527 | H. Hatzikirou, J. Alfonso, S. Mühle, C. Stern, S. Weiss, M. Meyer-Hermann Cancer therapeutic potential of combinatorial immuno- and vasomodulatory interventions In Journal of The Royal Society Interface, Vol. 12, 112, DOI: 10.1098/rsif.2015.0439, The Royal Society, 2015 |
| ZIH-IR-1526 | M. Seifert, M. Garbe, B. Friedrich, M. Mittelbronn, B. Klink Comparative Transcriptomics Reveals Similarities and Differences between Astrocytoma Grades In BMC Cancer, Vol. 15, number: 1,pages: 1-22, doi= 10.1186/s12885-015-1939-9, 2015 |
| ZIH-IR-1525 | G. McGilvary, M. Atkinson, S. Gesing, A. Aguilera, R. Grunzke, E. Sciacca Enhanced Usability of Managing Workflows in an Industrial Data Gateway In Interoperable Infrastructures for Interdisciplinary Big Data Sciences (IT4RIs 15), DOI: 10.1109/escience.2015.62, 2015 |
| ZIH-IR-1524 | R. Grunzke, J. Krüger, S. Gesing, S. Herres-Pawlis, A. Hoffmann, A. Aguilera, Wolfgang E. Nagel Managing Complexity in Distributed Data Life Cycles Enhancing Scientific Discovery In e-Science (e-Science), 2015 IEEE 11th International Conference on, DOI: 10.1109/escience.2015.72, 2015 |
| ZIH-IR-1523 | Y. Oleynik, J. Schuchart, P. Kjeldsberg, M. Gerndt, Wolfgang E. Nagel Run-time Exploitation of Application Dynamism for Energy-efficient Exascale Computing (READEX) In 2015 IEEE 18th International Conference on Computational Science and Engineering, 2015 |
| ZIH-IR-1522 | S. Gesing, R. Dooley, M. Pierce, J. Krüger, R. Grunzke, S. Herres-Pawlis, A. Hoffmann Science gateways-leveraging modeling and simulations in HPC infrastructures via increased usability In High Performance Computing & Simulation (HPCS), 2015 International Conference on, 2015 |
| ZIH-IR-1521 | G. Juckeland, A. Grund, Wolfgang E. Nagel Performance Portable Applications for Hardware Accelerators: Lessons Learned from SPEC ACCEL In Parallel and Distributed Processing Symposium Workshop (IPDPSW), 2015 IEEE International, DOI: 10.1109/ipdpsw.2015.26, 2015 |
| ZIH-IR-1520 | S. Hegler, C. Statz, M. Mütze, H. Mooshofer, M. Goldammer, K. Fendt, S. Schwarzer, K. Feldhoff, M. Flehmig, U. Markwardt, Wolfgang E. Nagel, M. Schütte, A. Walther, M. Meinel, A. Basermann, D. Plettemeier Simulative Ultraschall-Untersuchung von Pitch-Catch-Messanordnungen für große zylindrische Stahl-Prüflinge und gradientenbasierte Bildgebung In tm - Technisches Messen, Vol. 82, 9, DOI: 10.1515/teme-2015-0031, 2015 |
| ZIH-IR-1519 | K. Böttger, H. Hatzikirou, A. Voss-Böhme, E. Cavalcanti-Adam, M. Herrero, A. Deutsch An Emerging Allee Effect Is Critical for Tumor Initiation and Persistence In PLoS Comput Biol, Vol. 11, 9, DOI: 10.1371/journal.pcbi.1004366, 2015 |
| ZIH-IR-1518 | D. Molka, D. Hackenberg, R. Schöne, Wolfgang E. Nagel Cache Coherence Protocol and Memory Performance of the Intel Haswell-EP Architecture In Proceedings of the 44th International Conference on Parallel Processing (ICPP'15), DOI: 10.1109/ICPP.2015.83, IEEE, 2015 |
| ZIH-IR-1517 | M. Bielert, F. Ciorba, K. Feldhoff, T. Ilsche, Wolfgang E. Nagel HAEC-SIM: A Simulation Framework for Highly Adaptive Energy-Efficient Computing Platforms In Eighth EIA International Conference on Simulation Tools and Techniques, 2015 |
| ZIH-IR-1516 | S. Herres-Pawlis, A. Hoffmann, A. Balasko, P. Kacsuk, G. Birkenheuer, A. Brinkmann, L. de la Garza, J. Krüger, S. Gesing, R. Grunzke, G. Terstyansky, N. Weingarten Quantum chemical meta-workflows in MoSGrid In Concurrency and Computation: Practice and Experience, Vol. 27, 2, DOI: 10.1002/cpe.3292, 2015 |
| ZIH-IR-1515 | A. Aguilera, R. Grunzke, U. Markwardt, D. Habich, D. Schollbach, J. Garcke Towards an Industry Data Gateway: An Integrated Platform for the Analysis of Wind Turbine Data In Science Gateways (IWSG), 2015 7th International Workshop on, DOI: 10.1109/iwsg.2015.8, 2015 |
| ZIH-IR-1514 | S. Herres-Pawlis, A. Hoffmann, T. Rosener, J. Krüger, R. Grunzke, S. Gesing Multi-layer Meta-metaworkflows for the Evaluation of Solvent and Dispersion Effects in Transition Metal Systems Using the MoSGrid Science Gateways In Science Gateways (IWSG), 2015 7th International Workshop on, DOI: 10.1109/iwsg.2015.13, 2015 |
| ZIH-IR-1513 | S. Gesing, J. Krüger, R. Grunzke, S. Herres-Pawlis, A. Hoffmann Challenges and Modifications for Creating a MoSGrid Science Gateway for US and European Infrastructures In Science Gateways (IWSG), 2015 7th International Workshop on, DOI: 10.1109/iwsg.2015.10, 2015 |
| ZIH-IR-1512 | T. Khassawna, W. Böcker, K. Brodsky, D. Weisweiler, P. Govindarajan, M. Kampschulte, U. Thormann, A. Henss, M. Rohnke, N. Bauer, R. Müller, A. Deutsch, A. Ignatius, L. Dürselen, A.Langheinrich, K. Lips, R. Schnettler, C. Heiss Impaired extracellular matrix structure resulting from malnutrition in ovariectomized mature rats In Histochemistry and Cell Biology, Vol. 144, DOI: 10.1007/s00418-015-1356-9, 2015 |
| ZIH-IR-1510 | A. Barak, Z. Drezner, E. Levy, M. Lieber, A. Shiloh Resilient gossip algorithms for collecting online management information in exascale clusters In Concurrency and Computation: Practice and Experience, DOI: 10.1002/cpe.3465, 2015 |
| ZIH-IR-1509 | S. Weitz, A. Deutsch, F. Peruani Self-propelled rods exhibit a novel phase-separated state characterized by the presence of active stresses and the ejection of polar clusters In Physical Review E, Vol. 92, 1, DOI: 10.1103/PhysRevE.92.012322, 2015 |
| ZIH-IR-1508 | L. Foret, L. Brusch, F. Jülicher Theory of cargo and membrane trafficking In Encyclopedia of Cell Biology, Vol. 4, pages: 56-62, doi= 10.1016/b978-0-12-394447-4.40009-x , 2015 |
| ZIH-IR-1507 | A. Deutsch Cellular automaton models for collective cell behaviour In Cellular Automata and Discrete Complex Systems, Vol. 9099, DOI: 10.1007/978-3-662-47221-7, 2015 |
| ZIH-IR-1506 | A. Reppas, G. Lolas, A. Deutsch, H. Hatzikirou The extrinsic noise effect on lateral inhibition differentiation waves In Transactions on Modeling and Computer Simulation, 2015 |
| ZIH-IR-1505 | H. Hatzikirou, K. Böttger, A. Deutsch Model-based comparison of cell density-dependent cell migration strategies In Math. Model. Nat. Phenom., Vol. 10, 1, DOI: 10.1051/mmnp/201510105, 2015 |
| ZIH-IR-1504 | C. Mente, A. Voss-Böhme, A. Deutsch Analysis of Individual Cell Trajectories in Lattice-Gas Cellular Automaton Models for Migrating Cell Populations In Bulletin of Mathematical Biology, Vol. 77, 4, DOI: 10.1007/s11538-015-0079-3, 2015 |
| ZIH-IR-1503 | Wolfgang E. Nagel, R. Jäkel, R. Müller-Pfefferkorn Execution Environments for Big Data: Challenges for User Centric Scenarios 2015 |
| ZIH-IR-1502 | O. Chara, L. Brusch Mathematical modelling of fluid transport and its regulation at multiple scales In BioSystems, Vol. 130, 1-10, DOI: 10.1016/j.biosystems.2015.02.004, 2015 |
| ZIH-IR-1501 | M. Herberg, T. Zerjatke, W. de Back, I. Glauche, I. Roeder Image-based quantification and mathematical modeling of spatial heterogeneity in ESC colonies In International Society for Advancement of Cytometry, Vol. Cytometry Part A, DOI: 10.1002/cyto.a.22598, 2015 |